An edition of Gene regulatory networks (2012)

Gene regulatory networks

methods and protocols

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Cover of: Gene regulatory networks by Bart Deplancke, Nele Gheldof
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An edition of Gene regulatory networks (2012)

Gene regulatory networks

methods and protocols

by and

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  • 0 Want to read
  • 0 Currently reading
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Publish Date
Publisher
Humana Press, Springer
Language
English
Pages
446

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Previews available in: English

Subjects
Laboratory Manuals, Gene expression, Gene Expression Regulation, Genetic regulation, Methode, Laboratory manuals, Gene Regulatory Networks, Netzwerk, Transcription Factors, Genregulation, Gene Expression

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Cover of: Gene Regulatory Networks
Gene Regulatory Networks: Methods and Protocols
2016, Humana Press
in English
Libraries near you: WorldCat
Cover of: Gene regulatory networks
Gene regulatory networks: methods and protocols
2012, Humana Press, Springer
in English
  • Not in Library
Libraries near you: WorldCat

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Book Details

Table of Contents

Pt. I. Regulatory state components. 1. How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome / Juan M. Vaquerizas, Sarah A. Teichmann, and Nicholas M. Luscombe. 2. Expression pattern analysis of regulatory transcription factors in Caenorhabditis elegans / Huiyun Feng, Hannah L. Craig, and Ian A. Hope. 3. High-throughput SELEX determination of DNA sequences bound by transcription factors in vitro / Nobuo Ogawa and Mark D. Biggin. 4. Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein / Min-Jeong Kim, Pil Joong Chung, Tae-Ho Lee, Tae-Hoon Kim, Baek Hie Nahm, and Yeon-Ki Kim. 5. Analysis of specific protein-DNA interactions by bacterial one-hybrid assay / Marcus B. Noyes. 6. MITOMI : a microfluidic platform for in vitro characterization of transcription factor-DNA interaction / Sylvie Rockel, Marcel Geertz, and Sebastian J. Maerkl. 7. Detecting protein-protein interactions with the split-ubiquitin sensor / Alexander Dünkler, Judith Müller, and Nils Johnsson. 8. Genome-wide dissection of posttranscriptional and posttranslational interactions / Mukesh Bansal and Andrea Califano. 9. Linking cellular signalling to gene expression using EXT-encoded reporter libraries / Anna Botvinik and Moritz J. Rossner. 10. Sample preparation for small RNA massive parallel sequencing / Willemijn M. Gommans and Eugene Berezikov.
Pt. II. Genomic components. 11. CAGE (cap analysis of gene expression) : a protocol for the detection of promoter and transcriptional networks / Hazuki Takahashi, Sachi Kato, Mitsuyoshi Murata, and Piero Carninci. 12. Detecting DNaseI-hypersensitivity sites with MLPA / Thomas Ohnesorg, Stefanie Eggers, and Stefan J. White. 13. Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method / Nele Gheldof, Marion Leleu, Daan Noordermeer, Jacques Rougemont, and Alexandre Reymond
Pt. III. Mapping protein-DNA interactions. 14. Analyzing transcription factor occupancy during embryo development using ChIP-seq / Yad Ghavi-Helm and Eileen E.M. Furlong. 15. Genome-wide profiling of DNA-binding proteins using barcode-based multiplex solexa sequencing / Sunil Kumar Raghav and Bart Deplancke. 16. Computational analysis of protein-DNA interactions from ChIP-seq data / Jacques Rougemont and Felix Naef. 17. Using a yeast inverse one-hybrid system to identify functional binding sites of transcription factors / Jizhou Yan and Shawn M. Burgess. 18. Using cisTargetX to predict transcriptional targets and networks in Drosophila / Delphine Potier, Zeynep Kalender Atak, Marina Naval Sanchez, Carl Herrmann, and Stein Aerts. 19. Proteomic methodologies to study transcription factor function / Harry W. Jarrett. 20. High-throughput gateway-compatible yeast one-hybrid screen to detect protein-DNA interactions / Korneel Hens, Jean-Daniel Feuz, and Bart Deplancke
Pt. IV. Visualization GRNs. 21. BioTapestry : a tool to visualize the dynamic properties of gene regulatory networks / William J.R. Longabaugh
Pt. V. Modeling of GRNs. 22. Implicit methods for qualitative modeling of gene regulatory networks / Abhishek Garg, Kartik Mohanram, Giovanni De Micheli, and Ioannis Xenarios.

Edition Notes

Includes bibliographical references and index.

Published in
New York
Series
Methods in molecular biology -- 786, Springer protocols, Methods in molecular biology (Clifton, N.J.) -- v. 786., Springer protocols

Classifications

Library of Congress
QH450 .G4632 2012, RB155-155.8QH431QP11, RB155-155.8

The Physical Object

Pagination
xi, 446 p. :
Number of pages
446

ID Numbers

Open Library
OL25355255M
Internet Archive
generegulatoryne00depl
ISBN 10
1617792918, 1617792926
ISBN 13
9781617792915, 9781617792922
LCCN
2011936383
OCLC/WorldCat
731918798

Source records

Library of Congress MARC record
Internet Archive item record
Better World Books record
Library of Congress MARC record
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Better World Books record

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August 2, 2020 Edited by ImportBot import existing book
June 20, 2012 Created by LC Bot import new book