An edition of Spliceosomal pre-mRNA splicing (2014)

Spliceosomal pre-mRNA splicing

methods and protocols

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April 9, 2023 | History
An edition of Spliceosomal pre-mRNA splicing (2014)

Spliceosomal pre-mRNA splicing

methods and protocols

  • 0 Ratings
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  • 0 Currently reading
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"Providing a guide to classical experimental approaches to decipher splicing mechanisms and experimental strategies that rely on novel multi-disciplinary approaches, Spliceosomal Pre-mRNA Splicing: Methods and Protocols describes the theory of alternative pre-mRNA splicing in seven introductory chapters and then introduces protocols and their theoretical background relevant for a variety of experimental research. These protocol chapters cover basic methods to detect splicing events, analyses of alternative pre-mRNA splicing in vitro and in vivo, manipulation of splicing events, and high-throughput and bioinformatic analyses of alternative splicing. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and practical, Spliceosomal Pre-mRNA Splicing: Methods and Protocols will aid newcomers and seasoned molecular biologists in understanding the fascinating world of alternative splicing with the ultimate goal of paving the way for many new discoveries to come."--

Publish Date
Language
English
Pages
427

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Edition Availability
Cover of: Spliceosomal pre-mRNA splicing
Spliceosomal pre-mRNA splicing: methods and protocols
2014, Humana Press, Springer, Humana
in English

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Book Details


Table of Contents

Pre-mRNA splicing reaction -- Somsakul Pop Wongpalee and Shalini Sharma
Diversity and evolution of spliceosomal systems -- Scott William Roy and Manuel Irimia
Mechanisms of Spliceosomal Assembly -- Ni-ting Chiou and Kristen W. Lynch
Alternative pre-mRNA splicing -- Stacey D. Wagner and J. Andrew Berglund
Regulation of alternative pre-mRNA splicing -- Miguel B. Coelho and Christopher W.J. Smith
Introduction to cotranscriptional RNA splicing -- Evan C. Merkhofer, Peter Hu, and Tracy L. Johnson
Chromatin and splicing -- Nazmul Haque and Shalini Oberdoerffer
Preparation of splicing competent nuclear extracts -- Chiu-Ho T. Webb and Klemens J. Hertel
Preparation of yeast whole cell splicing extract -- Elizabeth A. Dunn and Stephen D. Rader
Efficient splinted ligation of synthetic RNA using RNA ligase -- Martha R. Stark and Stephen D. Rader
In vitro assay of pre-mRNA splicing in mammalian nuclear extract -- Maliheh Movassat, William F. Mueller, and Klemens J. Hertel
Kinetic analysis of in vitro pre-mRNA splicing in HeLa nuclear extract -- William F. Mueller and Klemens J. Hertel
In vitro systems for coupling RNAP II transcription to splicing and polyadenylation -- Eric G. Folco and Robin Reed
Isolation and accumulation of spliceosomal assembly intermediates -- Janine O. Ilagan and Melissa S. Jurica
Complementation of U4 snRNA in S. cerevisiae splicing extracts for biochemical studies of snRNP assembly and function -- Martha R. Stark and Stephen D. Rader
Expression and purification of splicing proteins from mammalian cells -- Eric Allemand and Michelle L. Hastings
Single molecule approaches for studying spliceosome assembly and catalysis -- Eric G. Anderson and Aaron A. Hoskins
Cell-based splicing of minigenes -- Sarah A. Smith and Kristen W. Lynch
Quantifying the ratio of spliceosome components assembled on pre-mRNA -- Noa Neufeld, Yehuda Brody, and Yaron Shav-Tal
Antisense methods to modulate pre-mRNA splicing -- Joonbae Seo, Eric W. Ottesen, and Ravindra N. Singh
Using yeast genetics to study splicing mechanisms -- Munshi Azad Hossain and Tracy L. Johnson
Medium throughput analysis of alternative splicing by fluorescently labeled RT-PCR -- Ryan Percifield, Daniel Murphy, and Peter Stoilov
Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing -- Nicole I. Bieberstein, Korinna Straube, and Karla M. Neugebauer
Computational approaches to mine publicly available databases -- Rodger B. Voelker, William A. Cresko, and J. Andrew Berglund
Approaches to link RNA secondary structures with splicing regulation -- Mireya Plass and Eduardo Eyras
Methods to study splicing from high-throughput RNA sequencing data -- Gael P. Alamancos, Eneritz Agirre, and Eduardo Eyras
Global protein-RNA interaction mapping at single nucleotide resolution by iCLIP-seq -- Chengguo Yao, Lingjie Weng, and Yongsheng Shi
Predicting alternative splicing -- Yoseph Barash and Jorge Vaquero Garcia.

Edition Notes

Includes bibliographical references and index.

Published in
New York
Series
Methods in molecular biology -- 1126, Methods in molecular biology (Clifton, N.J.) -- v. 1126.

Classifications

Dewey Decimal Class
579.2/5
Library of Congress
QH450.2 .S65 2014, RB155-155.8

The Physical Object

Pagination
xi, 427 p.
Number of pages
427

ID Numbers

Open Library
OL30387826M
ISBN 10
1627039791
ISBN 13
9781627039796, 9781627039802
LCCN
2014931088
OCLC/WorldCat
862101696

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April 9, 2023 Edited by ImportBot import existing book
February 26, 2022 Edited by ImportBot import existing book
September 21, 2020 Created by MARC Bot import new book