An edition of Proteome bioinformatics
(2010)
Proteome bioinformatics
by Simon J. Hubbard and Andrew R. Jones
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Table of Contents
1. An introduction to proteome bioinformatics / Andrew R. Jones and Simon J. Hubbard
2. Bioinformatics methods for protein identifiction using peptide mass fingerprinting / Zhao Song, Luonan Chen, and Dong Xu
3. Computational approaches to peptide identification via tandem MS / Simon J. Hubbard
4. Scoring and validation of tandem MS peptide identification methods / Markus Brosch and Jyoti Choudhary
5. Target-decoy search strategy for mass spectrometry-based proteomics / Joshua E. Elias and Steven P. Gygi
6. Understanding and exploiting peptide fragment ion intensities using experimental and informatic approaches / Ashley C. Gucinski ... [et al.]
7. Spectral library searching for peptide identification via tandem MS / Henry Lam and Ruedi Aebersold
8. De Novo sequencing methods in proteomics / Christopher Hughes, Bin Ma, and Gilles A. Lajoie
9. Cross species proteomics / J.C. Wright, R.J. Beynon, and S.J. Hubbard
10. Gene model detection using mass spectrometry / Bindu Nanduri ... [et al.]
11. Signal processing in proteomics / Rene Hussong and Andreas Hildebrandt
12. A High performance reconfigurable computing solution for peptide mass fingerprinting / Daniel Coca, Istvan Bogdan, and Robert J. Beynon
13. Mining proteomic MS/MS data for MRM transitions / Jennifer A. Chem (Mead), Luca Bianco, and Conrad Bessant
14. OpenMS and TOPP: Open source software for LC-MS data analysis / Knut Reinert and Oliver Kohlbacher
15. Trans-Proteomic pipeline: a pipeline for proteomic analysis / Patrick G.A. Pedrioli
16. Informatics and statistics for analyzing 2-D gel electrophoresis images / Andrew W. Dowsey ... et al.
17. Automated generic analysis tools for protein quantitation using stable isotope labeling / Wen-Lian Hsu and Ting-Yi Sung
18. An Overview of label-free quantitation methods in proteomics by mass spectrometry / Jason W.H. Wong and Gerard Cagney
19. The PeptideAtlas Project / Eric W. Deutsch
20. Using the PRIDE proteomics identifications database for knowledge discovery and data analysis / Philip Jones and Lennart Martens
21. Molecular interactions and data standardisation / Sandra Orchard and Samuel Kerrien
22. Mass spectrometer ouput file format mxML / Eric W. Deutsch
23. Managing experimental data using FuGE / Andrew R. Jones and Allyson L. Lister
24. Proteomics data collection (ProDaC): Publishing and collection proteomics data sets in public repositories using standard formats / Christian Stephan ... [et al.]
25. Computational resources for the prediction and analysis of native disorder in proteins / Melissa M. Pentony, Jonathan Ward, and David T. Jones.
Edition Notes
Includes bibliographical references and index.
Also available in an electronic version.
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| September 17, 2023 | Edited by ImportBot | import existing book |
| December 25, 2022 | Edited by MARC Bot | import existing book |
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