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Batch effects and noise in microarray experiments, sources, and solutions
2009, J. Wiley
in English
0470741384 9780470741382
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Book Details
Table of Contents
Variation, variability, batches, and bias in microarray experiments : an introduction / Andreas Scherer
Microarray platforms and aspects of experimental variation / John Coller
Experimental design / Peter Grass
Batches and blocks, sample pools, and subsamples in the design and analysis of gene expression studies / Naomi Altman
Aspects of technical bias / Martin Schumacher ... [et al.]
Bioinformatic strategies for cDNA-microarray data processing / Jessica Fahlén ... [et al.]
Batch effect estimation of microarray platforms with analysis of variance / Nysia I. George and James J. Chen
Variance due to smooth bias in rat liver and kidney baseline gene expression in a large multi-laboratory data set / Michael J. Boedigheimer ... [et al.]
Microarray gene expression : the effects of varying certain measurement conditions / Walter Liggett ... [et al.]
Adjusting batch effects in microarray experiments with small sample size using empirical Bayes methods / W. Evan Johnson and Cheng Li
Identical reference samples and empirical bayes method for cross-batch gene expression analysis / Wynn L. Walker and Frank R. Sharp
Principal variance components analysis : estimating batch effects in microarray gene expression data / Jianying Li ... [et al.]
Batch profile estimation, correction, and scoring / Tzu-Ming Chu ... [et al.]
Visualization of cross-platform microarray normalization / Xuxin Liu ... [et al.]
Toward integration of biological noise : aggregation effect in microarray data analysis / Lev Klebanov and Andreas Scherer
Potential sources of spurious associations and batch effects in genome-wide association studies / Huixiao Hong ... [et al.]
Standard operating procedures in clinical gene expression biomarker panel development / Khurram Shahzad ... [et al.]
Data, analysis, and standardization / Gabriella Rustici, Andreas Scherer, and John Quackenbush.
Edition Notes
Includes bibliographical references and index.
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